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Welcome to the GenomeWeb
Mapping Analysis
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This provides utilities for constructing physical genomic maps

[info] Translate I.M.A.G.E. Consortium clone ID to clone name
[info] Physical Mapping Calculators
[info] Physical Mapping Server
[info] Gene Map Designer

Detailed information on the above options

Translate I.M.A.G.E. Consortium clone ID to clone name
Use this page to translate your IMAGE IDs into their corresponding CLONE NAMES. ;Simply enter your IMAGE IDs in the boxes below, and click on FIND CLONE NAMES.

Physical Mapping Calculators
The calculators below are tools for plotting certain measures of the experimental progress of physical mapping projects.

This calculator is the most trivial of all: it simply shows how the library redundancy and % of target genome covered depends on the number of clones.

This calculator deals with experiments based on hybridisations with randomly chosen short "anchor" probes.

These two calculate properties of contigs constructed by fingerprinting random clones.

Physical Mapping Server
You can now run several programs from the physical mapping software package offered by the Max-Planck-Institute for Molecular Genetics.

You are asked to read the user's manual if you're using the Physical Mapping Server for the first time. You will need hybridisation or STS-based mapping data files to run a session. If you don't have the data files ready, examples of program outputs are available : contig construction with Java display, contig construction (truncated log) and plate hits (truncated log).

Gene Map Designer
This cute little script enables you to draw - automagically - gene maps based on a pure text description. The virtues of such an approach are simple - you can produce automatically a largish gene list for example out of your database, maybe add some patterns / colours for selected genes, and draw your map almost instantly.

Say you want to draw all your genes with the promoter identified in red

to find these genes and replace "colour 3" instead (3 stands for red, nevermind now) - and feed it via cut&paste to this site.

Any Comments, Questions? Support@hgmp.mrc.ac.uk