LON-CAPA Protein Sequence Editors and Formats

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Protein Sequence Editors and Formats

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These are a collection of protein sequence editor and formatting utilities.

BOXSHADE - pretty printing of multiple alignments
Sequence color coding
A Gallery of Sequence Logos
CINEMA - Colour INteractive Editor for Multiple Alignments
WebLogo Sequence Logo Generation Main Form

Detailed information on the above options

BOXSHADE - pretty printing of multiple alignments
This program generates publication-quality (or editable) graphics from multiple-alignment files. Many different input- and output-formats are supported. Conserved and/or similar residues are emphasized by various degrees of shading. It is also possible to specify a similarity-threshold that has to be reached for shading a residue.

Sequence color coding
This colours your sequence according to your choice of amino acids.

A Gallery of Sequence Logos
This illustrates somes sequences coloured according to your choice of amino acids.

CINEMA - Colour INteractive Editor for Multiple Alignments
Java program for multiple alignment of protein or nucleic acid sequences.

WebLogo Sequence Logo Generation Main Form
Visualization of the conservation (and more!) of the columns of an alignment

Any Comments, Questions? Support@hgmp.mrc.ac.uk